Prep your pan and oven. Heat oven to 350°F (175°C). Line a 12-cup muffin tin with liners or spray lightly with oil.
Mash the bananas. In a large bowl, mash bananas until mostly smooth with a few small lumps. You should have about 1 1/4 to 1 1/2 cups.
Whisk in wet ingredients. Add eggs, peanut butter, maple syrup, Greek yogurt, and vanilla.
Whisk until silky and well combined.
Mix dry ingredients. In a separate bowl, whisk flour, protein powder, baking powder, baking soda, salt, and cinnamon.
Combine gently. Add dry ingredients to wet and fold with a spatula just until no dry spots remain. If the batter is very thick, stir in milk 1 tablespoon at a time until it drops off the spoon easily. Do not overmix.
Stir in extras. Fold in chocolate chips, peanuts, or seeds if using.
Fill the cups. Divide batter evenly among 12 muffin cups, filling each about 3/4 full.
For taller domes, let the filled tin rest 5–8 minutes before baking.
Bake. Bake 15–19 minutes, until the tops are set, lightly golden, and a toothpick comes out with a few moist crumbs but no wet batter.
Cool. Let muffins cool in the pan for 5 minutes, then transfer to a rack to cool completely. This keeps the texture fluffy and prevents sogginess.